Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:alpha-actinin binding
go back to main search page
Accession:GO:0051393 term browser browse the term
Definition:Binding to alpha-actinin, one of a family of proteins that cross-link F-actin as antiparallel homodimers. Alpha-actinin has a molecular mass of 93-103 KDa; at the N-terminus there are two calponin homology domains, at the C-terminus there are two EF-hands. These two domains are connected by the rod domain. This domain is formed by triple-helical spectrin repeats.
Synonyms:narrow_synonym: alpha-actinin 1 binding;   alpha-actinin 4 binding;   nonmuscle alpha-actinin binding
 alt_id: GO:0051372

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
alpha-actinin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn1 actinin alpha 1 enables ISS AgBase GO_REF:0000024 NCBI chrNW_004624734:32,097,364...32,190,162
Ensembl chrNW_004624734:32,097,671...32,192,729 		JBrowse link
G Adora2a adenosine A2a receptor ISO in primary rat striatal neurons RGD PMID:12837758 RGD:1304399 NCBI chrNW_004624747:9,846,254...9,860,938
Ensembl chrNW_004624747:9,851,153...9,860,094 		JBrowse link
G Alms1 ALMS1 centrosome and basal body associated protein enables ISO (PMID:22693585) MGI PMID:22693585 NCBI chrNW_004624762:129,349...268,945
Ensembl chrNW_004624762:128,491...269,006 		JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C enables ISO (PMID:17110593) BHF-UCL PMID:17110593 NCBI chrNW_004624735:10,201,030...10,927,349
Ensembl chrNW_004624735:10,201,526...10,432,896 		JBrowse link
G Cacna1d calcium voltage-gated channel subunit alpha1 D enables ISO (PMID:17110593) BHF-UCL PMID:17110593 NCBI chrNW_004624822:3,391,045...3,734,258
Ensembl chrNW_004624822:3,392,044...3,919,415 		JBrowse link
G Dag1 dystroglycan 1 enables ISO (PMID:18341635) UniProt PMID:18341635 NCBI chrNW_004624730:3,417,356...3,488,300
Ensembl chrNW_004624730:3,417,347...3,488,879 		JBrowse link
G Itgb1 integrin subunit beta 1 ISO RGD PMID:16935300 RGD:2325674 NCBI chrNW_004624805:8,748,848...8,800,259
Ensembl chrNW_004624805:8,765,949...8,802,149 		JBrowse link
G Kcna5 potassium voltage-gated channel subfamily A member 5 enables ISO (PMID:10812072) BHF-UCL PMID:10812072 NCBI chrNW_004624860:2,042,325...2,045,953
Ensembl chrNW_004624860:2,039,771...2,045,867 		JBrowse link
G Kcnn2 potassium calcium-activated channel subfamily N member 2 enables ISO (PMID:17110593) BHF-UCL PMID:17110593 NCBI chrNW_004624733:7,429,681...7,931,192
Ensembl chrNW_004624733:7,429,681...7,578,596 		JBrowse link
G Lrrc10 leucine rich repeat containing 10 enables ISO (PMID:23236519) MGI PMID:23236519 NCBI chrNW_004624750:28,195,700...28,197,341 JBrowse link
G Magi1 membrane associated guanylate kinase, WW and PDZ domain containing 1 enables ISO (PMID:16464232) UniProt PMID:16464232 NCBI chrNW_004624888:46,089...686,823
Ensembl chrNW_004624888:46,214...687,291 		JBrowse link
G Myot myotilin enables ISO (PMID:10958653) MGI PMID:10958653 NCBI chrNW_004624733:9,131,051...9,160,813
Ensembl chrNW_004624733:9,130,399...9,160,908 		JBrowse link
G Nphs1 NPHS1 adhesion molecule, nephrin ISO RGD PMID:15331416 RGD:1600864 NCBI chrNW_004624794:10,117,464...10,138,511
Ensembl chrNW_004624794:10,116,777...10,135,963 		JBrowse link
G Pdlim2 PDZ and LIM domain 2 ISO RGD PMID:15505042 RGD:1359754 NCBI chrNW_004624758:18,085,818...18,098,621 JBrowse link
G Pdlim4 PDZ and LIM domain 4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:39,826,435...39,840,280
Ensembl chrNW_004624733:39,825,025...39,840,361 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel ISO RGD PMID:15843396 RGD:7175289 NCBI chrNW_004624872:4,539,965...4,592,004
Ensembl chrNW_004624872:4,539,847...4,594,793 		JBrowse link
G Pkd2l1 polycystin 2 like 1, transient receptor potential cation channel enables ISO (PMID:17944866) BHF-UCL PMID:17944866 NCBI chrNW_004624737:12,097,134...12,137,574
Ensembl chrNW_004624737:12,102,976...12,137,737 		JBrowse link
G Pparg peroxisome proliferator activated receptor gamma enables ISO (PMID:22351778) UniProt PMID:22351778 NCBI chrNW_004624956:84,673...207,176
Ensembl chrNW_004624956:83,842...149,481 		JBrowse link
G Ptprt protein tyrosine phosphatase receptor type T enables ISO (PMID:16973135) MGI PMID:16973135 NCBI chrNW_004624790:11,368,745...12,144,895
Ensembl chrNW_004624790:11,062,926...12,136,937 		JBrowse link
G Rara retinoic acid receptor alpha enables ISO (PMID:22351778) UniProt PMID:22351778 NCBI chrNW_004624795:2,935,432...2,975,226
Ensembl chrNW_004624795:2,934,731...2,967,232 		JBrowse link
G Synpo2 synaptopodin 2 enables ISO (PMID:20554076) UniProt PMID:20554076 NCBI chrNW_004624867:5,697,192...5,895,957 JBrowse link
G Xirp2 xin actin binding repeat containing 2 enables ISO (PMID:17046827) MGI PMID:17046827 NCBI chrNW_004624787:4,912,941...4,998,889
Ensembl chrNW_004624787:4,912,862...5,002,551 		JBrowse link
muscle alpha-actinin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ldb3 LIM domain binding 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624841:426,300...471,855
Ensembl chrNW_004624841:426,330...471,682 		JBrowse link
G Lpxn leupaxin enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624864:1,815,056...1,852,041
Ensembl chrNW_004624864:1,818,614...1,852,503 		JBrowse link
G Mypn myopalladin enables ISO (PMID:11309420) BHF-UCL PMID:11309420 NCBI chrNW_004624754:2,466,980...2,596,288
Ensembl chrNW_004624754:2,467,071...2,598,386 		JBrowse link
G Nrap nebulin related anchoring protein enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624737:32,895,903...32,963,988
Ensembl chrNW_004624737:32,896,006...32,963,983 		JBrowse link
G Pdlim1 PDZ and LIM domain 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624737:6,485,607...6,530,511
Ensembl chrNW_004624737:6,485,607...6,530,526 		JBrowse link
G Pdlim2 PDZ and LIM domain 2 enables ISO
IEA		 RGD
TreeGrafter		 PMID:15505042 GO_REF:0000118 RGD:1359754 NCBI chrNW_004624758:18,085,818...18,098,621 JBrowse link
G Pdlim3 PDZ and LIM domain 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624769:16,341,297...16,374,106
Ensembl chrNW_004624769:16,340,494...16,374,208 		JBrowse link
G Pdlim4 PDZ and LIM domain 4 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:39,826,435...39,840,280
Ensembl chrNW_004624733:39,825,025...39,840,361 		JBrowse link
G Pdlim5 PDZ and LIM domain 5 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624757:22,332,479...22,597,312
Ensembl chrNW_004624757:22,332,505...22,597,586 		JBrowse link
G Pdlim7 PDZ and LIM domain 7 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:12,591,883...12,607,992
Ensembl chrNW_004624733:12,591,883...12,607,992 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel enables ISO
IEA		 RGD
TreeGrafter		 PMID:15843396 GO_REF:0000118 RGD:7175289 NCBI chrNW_004624872:4,539,965...4,592,004
Ensembl chrNW_004624872:4,539,847...4,594,793 		JBrowse link
G Pkd2l1 polycystin 2 like 1, transient receptor potential cation channel enables ISO (PMID:17944866) BHF-UCL PMID:17944866 NCBI chrNW_004624737:12,097,134...12,137,574
Ensembl chrNW_004624737:12,102,976...12,137,737 		JBrowse link
G Synpo2 synaptopodin 2 enables ISO (MGI:3768463|PMID:17923693) UniProt PMID:17923693 MGI:3768463 NCBI chrNW_004624867:5,697,192...5,895,957 JBrowse link
G Tgfb1i1 transforming growth factor beta 1 induced transcript 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624782:14,471,427...14,476,792
Ensembl chrNW_004624782:14,471,415...14,476,914 		JBrowse link
G Ttn titin enables ISO (PMID:9501083) BHF-UCL PMID:9501083 NCBI chrNW_004624844:484,593...760,155 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 16258
    binding 14754
      protein binding 13366
        cytoskeletal protein binding 916
          actinin binding 43
            alpha-actinin binding 32
              muscle alpha-actinin binding 15
paths to the root